Martin,
I made that specific figure with scuba, where you can overlay with a multicolor scale. Howevere, when you load the pial surface and overlay in tksurfer (set the minimum at 1, the mean around 3 and the maximum between 5 and 6), you can get a pretty nice red-orange-yellow color.
Marie
Quoting Martin Kavec martin.kavec@gmail.com:
Hi folks,
I am scratching my head, how did you guys set the color scheme of the lgi overlay on:
http://surfer.nmr.mgh.harvard.edu/fswiki/LGI
the image with text "Example of lGI overlay on the brain using a colocoded scale"
What I do is I load pial surface and overlay ?h.pial_lgi, but can not replicate the scheme on the webpage.
Thanks,
Martin _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer