you should be able to run
recon-all -make all -s $subject -sd $sdir
and it will figure out what needs to be rerun
cheers Bruce
On Fri, 14 Jun 2019, Barletta, Valeria wrote:
That final surfaces where not modified, but maybe that is because I was missing -autorecon3 in my command.
Shall I re-launch "recon-all -all" to fix that problem with lh.curv?
Thank you,
Vale
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Bruce Fischl fischl@nmr.mgh.harvard.edu Sent: Friday, June 14, 2019 12:02:30 PM To: Freesurfer support list Subject: Re: [Freesurfer] incompatible vertex number ??? Hi Vale
that typically means that recon-all was rerun and not completed. WHen you say autorecon2-wm is not working what do you mean? cheers BruceOn Fri, 14 Jun 2019, Barletta, Valeria wrote:
Dear Freesurfers, I am getting this type of error in the Terminal when I open my images on Freesurfer:
MRISreadNewCurvature: incompatible vertex number in file /autofs/space/alicudi_002/users/mscat/users/caterina/3T/recons_fsv5.3/MSTAT_MS_001_B/surf/lh.curv No such file or directory could not read curvature from curv No such file or directory mpatible vertex number in file /autofs/space/alicudi_002/users/mscat/users/caterina/3T/recons_fsv5.3/MSTAT_MS_001_B/surf/lh.curv
I can still visualize and modify the images, but I noticed that recon-all autorecon2-wm for wm
edits
is not working. Are these two things related?
Thank you, Vale