Hello,
So I'm attempting to use the V1_predict script to generate a primary visual cortex label and had been receiving an error message. I was able to track down the error to the mris_register command:
mris_register -inflated -a 4096 -dist 10.0 -parea 1.0 \ /surf/lh.sphere \ /label/lh.v1.invivo.tif \ /surf/lh.v1.invivo.reg
returns this error message:
reading surface from /autofs/space/eesmith_001/users/dierksen/Petichial/2988_01192010/surf/lh.sphere... reading template parameterization from /autofs/space/eesmith_001/users/dierksen/Petichial/V1_average/label/lh.v1.invivo.tif... mrisReadTriangleFile(/autofs/space/eesmith_001/users/dierksen/Petichial/2988_01192010/surf/lh.smoothwm): surface doesn't match /autofs/space/eesmith_001/users/dierksen/Petichial/2988_01192010/surf/lh.sphere
No such file or directory mrisReadTriangleFile failed.
No such file or directory MRISreadOriginalProperties: could not read surface file smoothwm No such file or directory ERROR -5 from MRISreadOriginalProperties().
Since it said it could not read the smoothwm file I tried to re-generate this surface using:
recon-all -subj_id subject -smooth2
Which returned a "recon-all finished without error" message. I re-ran the above command but got the same error message.
Is there another way I can fix the smoothwm surface? Is there a work around?
Thanks, Greg