2 Oct
2015
2 Oct
'15
10:53 a.m.
Thanks for you reply, Rudolph.
We have a cluster environment in our university, and the best Ubuntu version to us for now is Ubuntu 12.04 (in a closest future we will update to a newer version, but not now...).
In the download page there is only FreeSurfer for CentOS, Mac and a Virtual Machine of Xubuntu, but not to Ubuntu. ( https://surfer.nmr.mgh.harvard.edu/fswiki/Download )
I couldn't find the binaries to compile, too. I've looked at ( http://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/ ).
To me the best choice is the binaries or the compiled source (not apt, yum, etc..) , because we put all applications in "/usr/local".
Could you help me to find one of these options to download?
Thanks again
--
Att,
Bruno Bragança Mendes
Laboratório de Alto Desempenho LAD/PUCRS
Av. Ipiranga, 6681 - Prédio 32 Térreo - Sala 120
+55 51 33538001
2015-10-01 18:40 GMT-03:00 Rudolph Pienaar rudolph.nmr@gmail.com:
> Yes, FreeSurfer can be installed on Ubuntu without any issues. There is
> also no functional difference between Ubuntu server and Ubuntu Desktop.
>
> Do you have a compelling reason for wanting to use Ubuntu 12.04? It was
> released in 2012 and is rather ancient in Ubuntu terms. The current
> version of Ubuntu is 15.04 and in fact 15.10 is about to released in
> three weeks.
>
> I'd strongly recommend you update to a modern Ubuntu.
>
> Having said that, certainly on Ubuntu 14.04 and above, once installed
> you need to simply symlink some libraries since the versions FreeSurfer
> has been compiled against are depreciated on Ubuntu 14.04 and later.
>
> In a terminal, simply type (make sure that each command is on a single
> line -- the email formatting might have split it in two):
>
> For Trackvis and dtk
>
> sudo ln -s /usr/lib/x86_64-linux-gnu/libtiff.so.5
> /usr/lib/x86_64-linux-gnu/libtiff.so.3
>
> sudo ln -s /usr/lib/x86_64-linux-gnu/libmng.so.2.0.2
> /usr/lib/x86_64-linux-gnu/libmng.so.1
>
> For FreeSurfer:
>
> sudo ln -s /usr/lib/x86_64-linux-gnu/libvnl_algo.so
> /usr/lib/x86_64-linux-gnu/libvnl_algo.so.1.14
>
> sudo ln -s /usr/lib/x86_64-linux-gnu/libvnl.so
> /usr/lib/x86_64-linux-gnu/libvnl.so.1.14
>
> sudo ln -s /usr/lib/x86_64-linux-gnu/libv3p_netlib.so
> /usr/lib/x86_64-linux-gnu/libv3p_netlib.so.1.14
>
> HTH
> -=R
>
> On 10/1/15 15:58 , Bruno LAD wrote:
> > Hi, could you help me please, because a couldn't find the answer for my
> > question in the wiki.
> >
> > Can FreeSurfer be installed on ubuntu server 12.04? How can I do it, if
> > it's possible?
> >
> >
> > Thank you.
> >
> > --
> > Best Regards
> > Bruno Bragança Mendes
> > Laboratório de Alto Desempenho LAD/PUCRS
> > Av. Ipiranga, 6681 - Prédio 32 Térreo - Sala 120
> > +55 51 33538001 tel:%2B55%2051%2033538001
> >
> >
> >
> > _______________________________________________
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> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> > The information in this e-mail is intended only for the person to whom
> it is
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> > contains patient information, please contact the Partners Compliance
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> >
>
>
> --
> Rudolph Pienaar, M.Eng, D.Eng / email: rudolph@nmr.mgh.harvard.edu
> MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging
> 149 (2301) 13th Street, Charlestown, MA 02129 USA
> _______________________________________________
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> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>