21 May
2013
21 May
'13
11:22 a.m.
Hi Vincent, I don't think it is supposed to be. Is that a problem? doug
On 05/21/2013 09:02 AM, Vincent Koppelmans wrote:
Dear FreeSurfer experts,
I have used dt_recon for tensor fitting of my diffusion data. I used the following syntax:
dt_recon --i dwi.nii.gz --b data.bval data.bvec --s subject_ID --o /DTI --no-reg --no-tal
When I inspect the FA data, the tensor fitting itself looks good, but the data is not skull stripped:
FA map:
mask:
I was wondering if I did something wrong and how I should fix this.
Thanks for your help.
Best,
Vincent
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/