Hi Guido, I think you should wait until recon-all is done. Running 2 recon-all commands on the same subject simultaneously: a) would need hacking recon-all; b) it’s a bad idea. Moreover, the subfields make use of wmparc.mgz, which is produced towards the very end of recon-all -all anyway. Cheers, /Eugenio
Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/
On 11 May 2017, at 15:10, Guido Pascariello <guido.pascariello@gmail.commailto:guido.pascariello@gmail.com> wrote:
Hi Experts,
I am running Freesurfer v6.0 on a Cluster. I've traied this command:
recon-all -i $IMAGEN -s $SUJETO -all -hippocampal-subfields-T1 -brainstem-structures
Although all step in recon-all works fine, hippocampal-subfields process allocate much more RAM than previous step (10 GB of RAM more or less, and take about 30 mins to be completed, according to other post in the forum).
I am thinking in run these one after another, in order to not need to reserve a lot of memory for a long period of time (just for optimization)
I want to know which are the files (from recon-all process) that hippocampal-subfields process needs? Just to be sure that these will be transferred to the node before the process starts.
If you please help me
Cheers
-- Bioing. Guido Pascariello Becario Doctoral CIFASIS - CONICET Grupo de Procesamiento de Señales Multimediales http://www.cifasis-conicet.gov.ar/ Tel/Fax: 54 341 482 6300/ 1771/ 72 Int. 386 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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