We are having issues running recon-all on our dicom files, as they are saved as a mosaic. When we open the original dicom file (attached) it lists out the rows, columns and slices. However, when we run mriparsesdcmdir, it just posts 0’s for the rows and columns (screen shot attached).
We are able to recreate the output file necessary to run recon-all (basically fill in the missing 0’s). Is there a way to tell recon-all to call on this file to retrieve the missing data manually?
Thank you, Ashley Ashley N. Stillman Clinical Psychology Graduate Research Assistant University of Tulsa, T.R.A.P.T. Lab Laureate Institute for Brain Research email: anstillman@laureateinstitute.orgmailto:anstillman@laureateinstitute.org | ashley-stillman@utulsa.edumailto:ashley-stillman@utulsa.edu
