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Hello FreeSurfer Developers,
I didn't cache the data during recon-all, so I ran the
following:
mris_preproc –fsgd PDDvsHC.fsgd --target fsaverage
--hemi lh
--meas thickness --out lh.MMSE-AD.thickness.00.mgh
It seemed to run smoothly (I've attached the log below)
so I
ran the next step:
mri_surf2surf --hemi lh --s fsaverage --sval
lh.PDDvsHC.thickness.00.mgh --fwhm 10 --cortex --tval
lh.PDDvsHC.thickness.10.mgh
I got the following error:
Reading source surface reg
freesurfer/subjects/fsaverage/surf/lh.sphere.reg
Loading source data
mghRead(/Users/cengzhou/Desktop/volumetric_FS/FS/lh.PDDvsHC.thickness.00.mgh, -1): could not open file
recon-all.log: see attached
Platform: mac os 10