Re: [Freesurfer] high resolution segmentation

Oh yes, I'll try to get to it tomorrow (unless Krish does) On Thu, 21 Apr 2011, Jonathan Winawer wrote:

Hi Krish, Bruce, et al.

I just wanted to follow up on the messages below.

We have the problem that when we re-run mris_volmask using a high-res volume (after recon-all and then after re-sampling the aseg file), we get anomalous segmentation: it looks like the surfaces are inside out, as you can see by the side by side comparison. The standard resolution ribbon looks good, but the high resolution ribbon looks inverted. We do not understand why and cannot seem to fix it. The new ribbon is properly aligned to the anatomy, but is mostly unlabeled, except right along the tissue boundaries.