Hi Elizabeth,
your best bet is probably to use mri_label2vol to write the label into a volume. I think it will take a registration file so you can write it out in functional coords
cheers Bruce On Tue, 1 Jun 2010, Elizabeth O'Hare wrote:
hello,
i'm trying to take a label that i drew on each subject's surface into volumetric space so that i can extract fMRI parameters within this anatomically defined ROI. i am able to see the label within each subject's orig.mgz volume with tkmedit. however, i'm not sure how to convert this label file into a format that FSL will recognize, given that neither mri_surf2vol, not mri_convert recognize labels as valid input files.
any advice is most appreciated!
thanks, libby
Elizabeth O'Hare, Ph.D. Postdoctoral Fellow Helen Wills Neuroscience Institute University of California, Berkeley 132 Barker Hall, MC #3190 Berkeley, CA 94720 510-642-5554 edohare@berkeley.edu
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