You don't need to spec dods/doss when you run mris_preproc, only with mri_glmfit. The fsgd in mris_preproc is only used to get a list of subjects to preproc (and so it is consistent with when you do run mri_glmfit).
doug
Juergen Haenggi wrote:
Dear FS experts
Does it make a difference whether I introduced the flag doss already in mris_preproc or only later when using mri_glmfit?
In mris_preproc the flag doss after the fsgd file is not recognized (see below)
mris_preproc --fsgd GCS_FSGD_lh_thickness.txt doss --target average --hemi lh --meas thickness --out GCS_lh_thickness_cov_doss.mgh
ERROR: flag doss not recognized [Macintosh-3:average/stats/glm] juergenhaenggi%
I used FS 4.0.5 for Mac Intel
Thanks for help Regards Juergen
Juergen Haenggi Ph.D. (Dr. des.) Division of Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi@psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
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