External Email - Use Caution
Hello Lisa, Are you running the 7.2.0 release, e.g. as installed by the package installer, https://secure-web.cisco.com/1WrA-NZx66e293R6KJNdyTGSNLLRCP3adzgCpi5RDIvdwv1... ?? After the package install, it will be listed in the Finder as /Applications/freesurfer/7.2.0
- R. On Feb 4, 2022, at 17:15, Taylor, Lisa <ltaylor2@hs.uci.edu> wrote: External Email - Use Caution Hi there, Not exactly sure if you'll be able to help but I am a bit stumped. I recently updated my MAC os to the new monterey update. I now get these error messages when trying to use Freesurfer, or even freeview:viewfreesurfer PATH/MRI/Freesurfer 2022-02-04 09:50:46.970 Freeview[476:2201959] *** WARNING: Method userSpaceScaleFactor in class NSView is deprecated on 10.7 and later. It should not be used in new applications. Use convertRectToBacking: instead. [unset]: aborting job:application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0viewfreesurfer:4: command not found: [0]PETSC[\w]$ freeview2022-02-04 09:51:20.263 Freeview[777:2204165] *** WARNING: Method userSpaceScaleFactor in class NSView is deprecated on 10.7 and later. It should not be used in new applications. Use convertRectToBacking: instead. [0]PETSC ERROR: ------------------------------------------------------------------------[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger[0]PETSC ERROR: or see http://secure-web.cisco.com/1ms4uWzVnFfUyjwx3Q4TOmbOyaHG14QccfYH-MccxZpbxEgP...: or try http://secure-web.cisco.com/1NcuTEBWMPSP0hSarumWN6v5_tx3tAZjQ4BCPGqeDQNpMDHU... linux or man libgmalloc on Apple to find memory corruption errors[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash.[0]PETSC ERROR: --------------------- Error Message ------------------------------------[0]PETSC ERROR: Signal received![0]PETSC ERROR: ------------------------------------------------------------------------[0]PETSC ERROR: Petsc Release Version 2.3.3, Patch 13, Thu May 15 17:29:26 CDT 2008 HG revision: 4466c6289a0922df26e20626fd4a0b4dd03c8124[0]PETSC ERROR: See docs/changes/index.html for recent updates.[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.[0]PETSC ERROR: See docs/index.html for manual pages.[0]PETSC ERROR: ------------------------------------------------------------------------[0]PETSC ERROR: Unknown Name on a darwin12. named Taylor-Desktop.local by taylorl Fri Feb 4 09:51:18 2022[0]PETSC ERROR: Libraries linked from /usr/pubsw/packages/petsc/2.3.3-p13-64b/src/petsc-2.3.3-p13/lib/darwin12.2.0-c-opt[0]PETSC ERROR: Configure run at Mon Dec 17 15:29:35 2012[0]PETSC ERROR: Configure options --with-debugging=no --with-cc=gcc --with-fc=0 --download-f-blas-lapack=0 --download-mpich=1 --with-mpi=1 --with-x=0 --with-gnu-copyright-code=0 --with-shared=0 COPTFLAGS=-O3 CXXOPTFLAGS=-O3 FOPTFLAGS=-O3[0]PETSC ERROR: ------------------------------------------------------------------------[0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file[unset]: aborting job:application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0I am not exactly tech savvy to understand how I can go about this to remedy it. Any advice?Thank you so much..LisaThis message may contain confidential information and is for the sole use of the intended recipient(s). If you are not the intended recipient, do not use, distribute, or copy this e-mail. Please notify the UC Irvine Health – Compliance and Privacy Office via email at hacompliance@uci.edu or by phone 888-456-7006 immediately if you have received this e-mail in error. E-mail transmission cannot be guaranteed to be secure or error-free as information could be intercepted, corrupted, lost, destroyed, arrive late or incomplete, or contain viruses. The sender therefore does not accept liability for any errors or omissions in the contents of this message, which arise as a result of e-mail transmission. _______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer