Hi Sophie, you can only run one subject at a time. What is your command for one subject? doug
On 02/07/2013 11:41 AM, Sophie Maingault wrote:
Actually, I have more than 450 subjects but I will give an example with less subjects (here 3 subjects). So the command line that I run is : recon-all -s < t0001 t0002 t0003 > -qcache.
Maybe I have to run this command line for each subject independently for example first : recon-all -s < t0001 > -qcache and then recon-all -s < t0002
-qcache ...etc, until I did it with all my subjects ?
Is it ok or there are others symbols that you don't understand ? I begin with Freesurfer so maybe I did some mistakes !
Sophie
-----Message d'origine----- De : freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] De la part de Douglas N Greve Envoyé : jeudi 7 février 2013 17:33 À : freesurfer@nmr.mgh.harvard.edu Objet : Re: [Freesurfer] qdec and file "-qcache"
Hi Sophie, can you cut and paste the actual command line that you are using? I don't know what all the symbols mean. doug On 02/04/2013 08:15 AM, Sophie Maingault wrote:
Hello everyone !
I want to use qdec so I tried to smooth the subjects with the following command: recon-all -s < t0001 … t0742 > -qcache (… = all my subjects !). The tutorial said that it takes about an hour but immediately a file was created : “-qcache” (2.95 Ko). Is it normal ? Does the process work or did I something wrong ?
Thanks a lot for your help !
Sophie
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