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Hello,
I am currently trying to run PVC for my adc images using the following script.
mri_gtmpvc --i /Volumes/DANIEL/dti_freesurf/dtrecon/${subj}.${cond}./adc-masked.nii.gz --reg /Volumes/DANIEL/dti_freesurf/dtrecon/${subj}.${cond}./register.lta --psf 0 --seg /Applications/freesurfer/subjects/Freesurfer_output/${subj}.${cond}.fsoutput/mri/gtmseg.mgz --default-seg-merge --auto-mask PSF .01 --mgx .25 --o /Volumes/DANIEL/dti_freesurf/dtrecon/${subj}.${cond}./adc.gtmpvc.output --no-rescale
What would I need to change in order to accurately perform PVC on FA images? Would the --mgx flag need to be changed?
Best, *Daniel Callow* *PhD Student, Neuroscience and Cognitive Science* Exercise for Brain Health Lab University of Maryland, College Park *ddcc2442@gmail.com ddcc2442@gmail.com* 443-254-6298