Hello all, I also noticed that the program searches for the talairach transform in the wrong directory??could someone tell me why..
THanks
Chacko.
#@# processing subject 8/25 subj13... Reading /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj13/surf/rh.sphere.reg Talairach transform /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/maketemp/AD/subj13/mri/transforms/talairach.xfm does not exist ... Loading tal xfm file /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj13/mri/transforms/talairach.xfm Read /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj13/mri/T1.mgz Surface area: 802.9 cm^2 Applying linear transform Talairach transform /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/maketemp/AD/subj13/mri/transforms/talairach.xfm does not exist ... Loading tal xfm file /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj13/mri/transforms/talairach.xfm
--- Chacko Cherian chacko_cherian@yahoo.com wrote:
Hello all,
Here's an error that i got while running group analysis on a couple of subjects...i checked the rh.orig file and the rh.sphere.reg and i could open both using tksurfer.
Reading
/ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj1/surf/rh.sphere.reg
mrisReadTriangleFile(/ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj1/surf/rh.orig):
surface doesn't match
/ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj1/surf/rh.sphere.reg
No such file or directory mrisReadTriangleFile failed.
No such file or directory MRISreadOriginalProperties: could not read surface file orig No such file or directory mris_make_average_surface: could not read orig file for rh.
No such file or directory
Thanks in advance
Chacko.
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