Hi Trinh
can you just attach the images? Your link didn't work for me. You can check the topology of the surface computationally using mris_euler_number. You might also try moving backwards/forwards a few slices to try to understand what is going on.
cheers Bruce
On Fri, 2 Oct 2015, Thục Trinh wrote:
[icon_10_generic_list.png] NCP140539_2_recon.rar Hi Freesurfer Experts,
We are on the process of troubleshooting our subjects's recon and we came across with this error that we can not determine what kind of problem this is: It seems there is no white matter and pial errors on all slices as we check on three different views (sagital,coronal and axial);however, when we load rh.inflated.nofix surface on both freeview and tksurfer, there is a big difference that at the frontal cortex (area near the medial wall), it appears a handle error and also some hole errors on freeview while it does not on tksurfer. Would you explain how it is visualized that makes us so confused to troubleshoot since we can not find anything wrong on white matter volume to be fixed? Here is our data,
Have a nice day,
Trinh