Re: [Freesurfer] Bad nu_noneck

Hi Jeff

have you tried adding control points to frontal regions? They look *very* dark

cheers Bruce On Wed, 23 Nov 2011, Jeff Sadino wrote:

Hello, I am having problems creating the nu_noneck file in fs500.  Using the default stream, the front and back of the brain is clipped off, which seems to be causing significantly bad surfaces downstream.  I changed the radius to 45 so that all of the brain is included, but then too much neck is left over, causing bad surfaces and a bad aseg downstream.  I am running now in fs510 to see if I can copy over from there.  If not, are there any recommendations on how to get a useful nu_noneck file?

Thank you, Jeff Sadino