Re: [Freesurfer] create label from cluster obtained with mri_glm-fit-sim

Give it the annotation (.annot) file

On 08/15/2013 01:26 PM, Garikoitz Lerma-Usabiaga wrote:

Thanks Doug! Could you give me an example please? I cannot get it to work, with this command I get a zero label...

mri_annotation2label --subject fsaverage --hemi lh --annotation lh.mc-z.abs.sig.cluster.mgh --labelbase lh.mc_mycluster

thanks again! Gari

On Thu, Aug 15, 2013 at 4:44 PM, Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

Hi Gari, you can use mri_annotation2label
doug


On 8/14/13 3:00 PM, Garikoitz Lerma-Usabiaga wrote:

...

Hi list,
we have a cluster that survived the Monte Carlo simulation for
thickness, and we would like to obtain more data from that exact
cluster (volume for example), is it possible to automatically
create a label from that cluster?

If I use mri_binarize or mri_cor2label is not working (I
understand that the clusters are not stored as individual
vertexes in the .mgh file but I don't know what the format is.

Thanks in advance!
Gari

PD: I am on a VPN and tksurfer is not working for manually
creating a label with the contour of the cluster.


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