you can try downloading our nightly 'dev' build of freeview, from here:
https://surfer.nmr.mgh.harvard.edu/fswiki/Download
or here's a quicker way (this is a one-line command... wget <file>):
wget ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/freeview/linux_centos6_x86_64/freeview.bin
and copy it to $FREESURFER_HOME/bin then chmod a+x $FREESURFER_HOME/bin/freeview.bin
N.
On Tue, 2014-11-04 at 12:35 +0000, Krieger, Donald N. wrote:
I recently downloaded and installed freesurfer-Linux-centos6_x86_64-table-pub-v5.3.0.tar.gz .
I had been running this version previously but had to reload everything due to a disk crash.
recon-all –all goes to completion with no errors.
freeview starts up fine but fails on loading a volume file with the PETC error listed below.
I found several references to this error in the archive but no resolution for my problem.
Any thoughts would be welcome – thanks.
[0]PETSC ERROR:
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Sig... ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR:
[0]PETSC ERROR: Petsc Release Version 2.3.3, Patch 13, Thu May 15 17:29:26 CDT 2008 HG revision: 4466c6289a0922df26e20626fd4a0b4dd03c8124
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
[0]PETSC ERROR: Unknown Name on a linux-gnu named BTRC-Server01 by kriegerd Tue Nov 4 06:55:17 2014
[0]PETSC ERROR: Libraries linked from /autofs/space/lyon_006/pubsw/Linux2-2.3-x86_64/packages/petsc/2.3.3-p13/src/petsc-2.3.3-p13/lib/linux-gnu-c-opt
[0]PETSC ERROR: Configure run at Tue Aug 10 15:01:59 2010
[0]PETSC ERROR: Configure options --with-debugging=no --with-cc=gcc --with-fc=g77 --download-f-blas-lapack=0 --download-mpich=1 --with-mpi=1 --with-x=0 --with-gnu-copyright-code=0 --with-shared=0 COPTFLAGS=-O3 CXXOPTFLAGS=-O3 FOPTFLAGS=-O3
[0]PETSC ERROR:
[0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
[unset]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
Regards,
Don
Signature0001
Don Krieger, Ph.D.
Department of Neurological Surgery
University ofPittsburgh
(412)648-9654 Office
(412)521-4431 Cell/Text
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