External Email - Use Caution
Thank you Doug! It works! Great!
I have another problem: I am reprocessing all my database with freesurfer 7.1.0, but in one subject segmentation failed. I had no problem with this subjects using freesurfer 6 What can be the problem?
I attach the log
Thank you for any help!
Angela
Il giorno 14 mag 2020, alle ore 17:06, Douglas N. Greve dgreve@mgh.harvard.edu ha scritto:
Someone just pointed out that I posted the wrong file. Here is the correct one. Copy it to the same folder
https://gate.nmr.mgh.harvard.edu/safelinks/greve/freesurfer_read_surf.m https://gate.nmr.mgh.harvard.edu/safelinks/greve/freesurfer_read_surf.m
On 5/13/2020 11:01 PM, Douglas N. Greve wrote:
Download this file https://gate.nmr.mgh.harvard.edu/safelinks/greve/find_corresponding_center_F... https://gate.nmr.mgh.harvard.edu/safelinks/greve/find_corresponding_center_FSformat.m and copy it into $FREESURFER_HOME/matlab and rerun. Let me know if that fixes it.
On 5/13/2020 5:57 PM, Angela Favaro wrote:
External Email - Use CautionPlease find attached the log Thank you Angela
Il giorno 13 mag 2020, alle ore 23:35, Douglas N. Greve <dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu> ha scritto:
Are you running this from recon-all? If so send the recon-all.log. If from the command line, send the command-line and all terminal output
On 5/13/2020 5:28 PM, Angela Favaro wrote:
External Email - Use CautionHi Doug! yes, it run under version 6! Please let me know if it is something that can be solved Thank you Angela
Il giorno 13 mag 2020, alle ore 23:06, Douglas N. Greve <dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu> ha scritto:
Does it run under version 6? We are not really supporting lGI anymore, but maybe we can get it to work
On 5/13/2020 4:24 PM, Angela Favaro wrote: > External Email - Use Caution > > > Hi all, > I am using the new version of Freesurfer 7.1.0 > And I am finding problems in running gyrification analysis. > I have Matlab 2016a (and 2019b) with the toolbox image processing > > The error is after the command find_corresponding_center_FSformat > > Matlab seems to start, but then the following message appears: > > >> Warning: Input argument must be a string. > > In ver (line 41) > In freesurfer_read_surf (line 70) > In find_corresponding_center_FSformat (line 26) > Error using fprintf > Function is not defined for 'struct' inputs. > > Error in freesurfer_read_surf (line 70) > fprintf('FREESURFER_READ_SURF [v %s]\n',ver(11:15)); > > Error in find_corresponding_center_FSformat (line 26) > [mesh_pial.vertices, mesh_pial.faces] = freesurfer_read_surf(pial); > > >> > ERROR: find_corresponding_center_FSformat did not complete successfully! > > I tried with both the Matlab version, but the error is the same > Any help is appreciated. Thank you so much > > Angela > > >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer