Hey all,
Problem: I am getting white matter ‘holes’ of varying sizes on the wm.mgz
I’ve uploaded 6 images to show an example of such a hole that was created. It is the same wm hole from all 3 views shown in brainmask.mgz and wm.mgz.
The album with all 6 images can be found at photobucket.com/FS51
Background:
The hole appears within the first or second recon-all (after edits made)
They are appearing in multiple subjects
If they do appear in a subject - it is usually between 2-3 per volume
I am using FS 5.1 on a mac (recon on a linux)
I am performing pial/wm/cp edits
I was curious if anyone had ever run into this error and a solution for avoiding it in the future.
Thanks in advance for the help!
Adam Martersteck
Cognitive Neurology and Alzheimer’s Disease Center
brain.northwestern.edu