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It would be great if you can have a look at the nu.mgz and talairach.xmf but unfortunately I´m not able to provide it in the mailing list. Is there another way to send you the files?
Thanks, Boris
Am 11.10.2018 um 22:04 schrieb Bruce Fischl fischl@nmr.mgh.harvard.edu:
Hi Boris
the input to that watershed call is the T1.mgz, but it is already problematic as you can see from the log. You should take a look at the nu.mgz and make sure it is correct. You can also email me the nu.mgz and the talairach.xfm (in the mri/transforms dir) if you want and I'll take a look cheers Bruce
On Thu, 11 Oct 2018, Boris Rauchmann wrote:
External Email - Use CautionHi again,
sorry. Please find attached the recon-all.log. I´m not sure how to check the input to watershed.
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