Dear Bruce,
Thank you for your response. I just looked at the f.nii file using fslview and it looks like the top is cut off.
Trang
what are you visualizing it in? If you just look at it without the
registration does it look ok?
On Thu, 4 Apr 2013, qtnguyen@nmr.mgh.harvard.edu wrote:
Dear Freesurfer experts, After I ran the functional to structural registration using the bbregister command, it looks like the dorsal part of the brain for this
participant
is cut off in the BOLD images. When we ran the scan, we made sure that the slice prescription covered the entire brain. We also looked at the
functional scan in the control room right after the scan and it looked ok.
We aren't sure what went wrong and why the bold data is cut off. Is there any way I can look at the raw dicom files to check if it includes the
entire brain?
Thank you, Trang _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer