[Freesurfer] -normalization all black

Teo Gelles

2 Jul 2014 2 Jul '14

5:04 p.m.

Hi Everyone,

I would like to normalize some images. But even when I test the -normalize option with

recon-all -s burt/ -normalization

which from what I can see changes /burt/mri/nu.mgz (which came with the freesurfer download) to /burt/mri/T1.mgz, T1.mgz is entirely black. Is there a way to fix this issue?

Thanks. Teo

Attachments:

attachment.html (text/html — 414 bytes)

Back to the thread

Back to the list