They should be there. Can you send recon-all.log and conf2hires.log files?
On 5/20/19 9:59 AM, Bruce Fischl wrote:
Hi Victor
the lh.white.{KH} are generated from the lh.white file, so I don't think it can have skipped creating it. Was it deleted? Can you double check?
Bruce On Mon, 20 May 2019, Zeng,Victor (BIDMC - Psychiatry) wrote:
Hi all,
I am running 7T scans through FS6, and I have been recommended to install the tools in ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/hcp/ . So I ran the new recon-all.v6.hires, specifically with the command "recon-all.hires.v6 -s subj -conf2hires -all"
For the most part, it ran, but I while QCing, it couldn't seem to load the surfs files. Recon-all seemed to have generated files called ?h.white.H and ?h.white.K, but apparently skipped the steps for ?h.white? I don't think I can load the surfs files without it, and I don't know if this is intentional.
Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab --
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