Hi Sal, yes you can. Use bbregister to register the lowb image to the anatomical. This creates a registration matrix. Use mri_vol2vol and the registration to map the ADC map to the anatomical, then use mri_segstats to extract the values doug
ps. Please post questions to the FS list instead of us directly so that others can benefit and it gets archived. thanks!
On 5/25/13 1:03 PM, Salil Soman wrote:
Dear Dr. Greve,
Is it possible to register a nonstructural MR sequences (e.g. an ADC map) with the aseg.mgz file (or aparc+aseg.mgz file, etc) and then, using the segmentation from the aseg (or aparc+aseg) file to output a mean ADC value for each anatomic area segmented?
Thank you for your time and consideration.
Best wishes,
Sal
Salil Soman, MD, MS