I think the problem may be this:
WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh!
you can also update bbregister with the version here
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/bbregister
doug
On 07/05/2013 09:55 AM, Satrajit Ghosh wrote:
hi doug,
bbregister was running into an error trying to do T2pial refinement
sequence of commands and output here:
https://gist.github.com/satra/5934639
and it looks like the absence of FSLDIR
i didn't have FSL installed on this machine - i thought that freesurfer had it's own version of flirt.
is FSL necessary?
cheers,
satra
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer