Thanks Eugenio,
It worked.
On Mon, Dec 1, 2014 at 7:11 PM, Eugenio Iglesias e.iglesias@bcbl.eu wrote:
Hi Gunjan, if what you're trying to do is to bring brainmask.mgz to the native voxel space of your input scan, you can run mri_convert brainmask.mgz brainmaskResampled.nii.gz -rl input.nii.gz where input.nii.gz is the scan you fed to FreeSurfer's recon-all (e.g., recon-all -i input.nii.gz -s .... ) Cheers, /Eugenio
Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu
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----- Original Message ----- From: "Gunjan Gautam" gunjan.gemini29@gmail.com To: "Freesurfer support list" freesurfer@nmr.mgh.harvard.edu Sent: Monday, December 1, 2014 2:23:12 PM Subject: [Freesurfer] Number of slices generated in the brainmask.mgz
Hi FreeSurfers,
brainmask.mgz is generating 256 slides per volume. How can I have control over it, in terms of generating less number of slides (say 181) per volume?
Gunjan
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