You need to use a valid output format like mgh, mgz, nii, etc (eg, surf/lh.inflated.mgh). Also, you should not run vol2surf mapping to the inflated surface as this surface is mostly outside the head. Use the default white surface and then visualize on the inflated only
On 05/12/2017 10:18 AM, Lukas Pezenka wrote:
Hi all,
I need a volume that maps my sulci. So first I've run recon-all on my data. Worked like a charm. Visual verification in freeview shows that the inflated surface looks just about right (although it does not seem to be registered to the aparc+aseg volume). However, when I try to run mri_surf2vol, I get the error message "ERROR: cannot recognize the type of surf/lh.inflated".
My precise syntax was mri_surf2vol --o out.nii --identity casestudy2 --surf inflated --hemi --lh --surfval surf/lh.inflated
Can anyone advise me on this?
Best regards,
Lukas
PS :I'm running on FS version 5.3.0. PPS: Is it possible to achieve this from freeview rather than from the command line? _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer