Re: [Freesurfer] Rawavg wrong

Hi Jan,

how will you ever know left from right? You can use the various options in mri_convert to tell it what the image orientation is, but you must be very careful not to introduce a left/right flip.

cheers Bruce On Tue, 6 Apr 2010, Janani Dhinakaran wrote:

Hello, I was wondering whether you could help me wit this. I had reported a talairach error during recon and was asked to check what the rawavg looked like. Sagital is shown instead of Coronal, and upside down at that! Clearly, there is some formatting error. Is there a way to fix this within Freesurfer or would you recommend I use Analyze to reformat, flip and then introduce the newly saved copy as the subject files? Are there any other options? Thank you for your help Jan