Dear freesurfer experts,
I included the new function fast_selxavg3b but I got another problem:
First error:
/opt/freesurfer/bin/mris_fwhm --mask /mnt/bp13dat/Studie43_Phantom_Arm/Statistik/4_MRT/fsfast/Thielemann/PT_2prae_VP01_2_f/bold/firstlevel.sm06.stc.lh/mask.nii.gz --i /mnt/bp13dat/Studie43_Phantom_Arm/Statistik/4_MRT/fsfast/Thielemann/PT_2prae_VP01_2_f/bold/firstlevel.sm06.stc.lh/rho1mn.nii.gz --o /mnt/bp13dat/Studie43_Phantom_Arm/Statistik/4_MRT/fsfast/Thielemann/PT_2prae_VP01_2_f/bold/firstlevel.sm06.stc.lh/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /mnt/bp13dat/Studie43_Phantom_Arm/Statistik/4_MRT/fsfast/Thielemann /opt/freesurfer/bin/mris_fwhm: symbol lookup error: /opt/freesurfer/bin/mris_fwhm: undefined symbol: ncerr
ERROR: /opt/freesurfer/bin/mris_fwhm --mask /mnt/bp13dat/Studie43_Phantom_Arm/Statistik/4_MRT/fsfast/Thielemann/PT_2prae_VP01_2_f/bold/firstlevel.sm06.stc.lh/mask.nii.gz --i /mnt/bp13dat/Studie43_Phantom_Arm/Statistik/4_MRT/fsfast/Thielemann/PT_2prae_VP01_2_f/bold/firstlevel.sm06.stc.lh/rho1mn.nii.gz --o /mnt/bp13dat/Studie43_Phantom_Arm/Statistik/4_MRT/fsfast/Thielemann/PT_2prae_VP01_2_f/bold/firstlevel.sm06.stc.lh/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /mnt/bp13dat/Studie43_Phantom_Arm/Statistik/4_MRT/fsfast/Thielemann
ans =
127
Second error with another server running the analyses:
/opt/freesurfer/bin/mris_fwhm: /opt/matlab/R2010b/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.11' not found (required by /opt/freesurfer/bin/mris_fwhm) /opt/freesurfer/bin/mris_fwhm: /opt/matlab/R2010b/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /opt/freesurfer/bin/mris_fwhm)
The problem seems to be the version of matlab. Which version would you suggest to use while using the function fast_selxavg3b? And why is there an undefined symbol?
Do you have any suggestions how to solve the problem?
Best regard, Desiree
ERROR: fast_selxavg3() failed\n
Zitat von Douglas Greve greve@nmr.mgh.harvard.edu:
oops, sorry, that did not make it into the distribution. You can get it here
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/fast_selxavg3b.m
thanks doug
On 9/29/15 9:15 AM, Silvia Désirée Thielemann wrote:
Dear members of the freesurfer mailing list,
I'm using freesurfer-Linux-centos7_x86_64-dev-20150728. I started to analyse mri data with fs-fast. I did the preprocessing and used the function mkanalysis-sess and mkcontrast-sess without any problems. I tried to run the function selxavg3-sess next and it stopped with the error message:
>>>> /opt/freesurfer/fsfast/toolbox/fast_selxavg3.m
/opt/freesurfer/fsfast/toolbox/fast_ldanaflac.m /opt/freesurfer/matlab/MRIread.m
>> ??? Undefined function or method 'fast_selxavg3b' for input
arguments of type
'char'.
ERROR: fast_selxavg3() failed\n
I looked for the function fast_selxavg3b in matlab. Unfortunatly only the function fast_selxavg3 is included in the fsfast/toolbox. By trying to use the function fast_selxavg3, it recommand me to use fast_selxavg3b. I could not find the function in the internet.
Do you have any suggestions what to do?
Best regards, Desiree
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