RE: [Freesurfer] how to register subcortical segmentation with theoriginal image

Hi Valentina,

Have you tried the following command?

recon-all -motioncor -s <subjectid>

Shahab

"Durastanti, Valentina (NIH/NINDS) [F]" durastantiv@ninds.nih.gov wrote:

Hi, I'm trying to run -autorcon1 of a subject who has 3 mgz images but always came out an error about the motion correction. So I tried run the step using just 1 image and it has gone fine! Have you any suggestion about the reason? The images look good!

Thanks Valentina

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