I am confused that how to align the brain.img with my functional data in spm...
https://surfer.nmr.mgh.harvard.edu/fswiki/SpmPainting
Best wishes!
1. Convert the brain.mgz volume to analyze:
mri_convert $SUBJECTS_DIR/subjectname/mri/brain.mgz brain.img
2. Align brain.img with your functional data in spm (eg, func.img)
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Irene Geng
Institute of Cognitive Neuroscience
East China Normal University