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Hello FreeSurfer developers,
I have created the "subjects" folder, and I included a large sample of participants inside the folder. I have performed transversal analysis (CROSS), all successfully.
I am now performing a longitudinal analysis with the first 8 subjects: Baseline: 001.mgz; 002.mgz;...; 008.mgz Longitudinal: 109.mgz; 110.mgz;...; 116.mgz
I followed the steps: https://secure-web.cisco.com/1TZpE_bQz0tJBdgLnT_voDCZ6eYQJTDqKQRLS1v7fMqRfNu... 1) BASE analysis was correctly performed for the 8 subjects, and folders (_base) were created 2) LONG analysis: -First subject with baseline data 001.mgz: LONG analysis finished without errors and A01.long.A01_base was created. -First subject with longitudinal data 109.mgz finished with error. -The rest of the subjects finished with error.
*Error message in all cases: *
*ERROR: no CROSS run data found in /usr/local/freesurfer/subjects/A01_3/mri/orig/. Make sure to have a volume called 001.mgz there.If you have a second run of data call it 002.mgz, etc.See also: http://secure-web.cisco.com/1TxTwmkGwewO59MpGmT0k8qAqls31H-w6Ys9AObOvl31f6H2... http://secure-web.cisco.com/1TxTwmkGwewO59MpGmT0k8qAqls31H-w6Ys9AObOvl31f6H2K-b6rluB_Js7vEm3_Krwma-URnsOMxp_s985JCOWefuuz-pVHlrqNIsQA9fL2QjXZiWQS67u93pp8tBIuyPA5O04hOPfqdNU1CaF1bF2iZiCbKjPX3zbzaZNweOnyKrgbH5GV_J69dv7uzyzpbbUuIKoTRqJwVFVsgG2QYkVcmrkXLTkisc3gaT1-LU6ddhDAX77ie_zJJKg5iTkJfeWK-QsL_D34KtjJrHIvnQ/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FConversionLinux VISUAL 5.4.0-81-generic #91~18.04.1-Ubuntu SMP Fri Jul 23 13:36:29 UTC 2021 x86_64 x86_64 x86_64 GNU/Linuxrecon-all -s A01_3.long.A01_base exited with ERRORS at dom oct 3 10:59:53 CEST 2021For more details, see the log file /usr/local/freesurfer/subjects/A01_3.long.A01_base/scripts/recon-all.logTo report a problem, see http://secure-web.cisco.com/1p2mJaCstn9B2xUbzEJL6vTV7W-2WQygHUdN3tVXXu7GPApY... http://secure-web.cisco.com/1p2mJaCstn9B2xUbzEJL6vTV7W-2WQygHUdN3tVXXu7GPApYHJtGp0lEBwEPbF3m5RgDtRsktbG-j9-pjtz1kQZ3LDgMqNByJ_BB92D-dYb-Ea2UBNkqbb4du26jPyfOorP1ydtB8DC33w-ht1-JkeQGtKeV6kZSx2-eE0KPZFKOBvBJ80G0KuD0f9HjOLpryuV_qY-nAmx77syHZZZ9VG5JX3aO4nr-uma-xHwEKDpnAMDXiRMt7zRiI1YqNKSUq4OmfrHDluBfWbaTk_rpxIg/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting*
However, I think I have correctly named the subjects (001.mgz; 002.mgz; 003.mgz...) and cross-sectional analyses were performed correctly. I can not identify the error.
Could you please guide me with this problem?
thank you in advance,
Best,
Mary