can you check to see if there is a large defect that is too big to fix? You should be able to see this in the log file or by checking the output of the job it is waiting for (PID 175414)
On Tue, 10 Dec 2019, Gwang-Won Kim wrote:
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Hi there, I tried to process "recon-all" as follow: recon-all -autorecon-all -i A.nii.gz -s A -parallel But, there is the message for 4 days as follow (FREESURFER _HOME /usr/local/freesurfer/dev): #@# Fix Topology rh mris_fix_topology -maz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig -ga -seed 1234 A rh Waiting for PID 175414 of (175414 175417) to complete... [?usn=6394937&email=kw0212@nate.com&key=cdb2d038f8e5c2bc28e1c728b8f131da$64cb44ed@mail3.nate.com]