It will not overwrite the log file so as to retain everything that has been done to the data set; new information is appended to the end of it.
On 8/17/16 3:58 AM, Donna Cosgrove wrote:
Hi,
I am updating previously recon'd datasets done with FS versions 4.4 and 5.2 to v5.3. I'm running the recon-all command on the previously done subjects to retain any edits.
However, when I had a look at the recon-all.log, it still has a date from the previous recon in 2013.
The pctsurfcon.log contains this info (below) with an updated date, but nothing else seems to have updated...
Logfile for pctsurfcon Sun Aug 14 06:12:59 IST 2016 setenv SUBJECTS_DIR /home/psych_lab/Desktop/freesurfer/FREESURFER_ DONE
cd /home/psych_lab/Desktop/freesurfer/FREESURFER_D ONE /CON9231/scripts /usr/local/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.11.2.1 2011/11/10 20:37:10 nicks Exp $ Linux nuig-79JP212-Ubuntu 3.13.0-43-generic #72-Ubuntu SMP Mon Dec 8 19:35:06 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/freesurfer Cleaning up
T he command I'm using
recon-all -all -s SUBJ_ID seems to works fine, even identifying initially in the terminal that the build stamps do not match. It does also take much less time than a recon from scratch.
Any thoughts would be appreciated.
Thanks for your help! Donna
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