Dear Freesurfers
Hi
I checked the functional to anatomical data registration using tkregister-sess -s $subj -fsd bold -per-run -bbr-sum. (The functional data is only collected from parietal and occipital lobes in 7T scanner).
The values obtained from tkregister-sess are too high (0.95) for 7 out of 8 runs.
When I looked at the snapshots obtained from QA_tools, they looked ok (top row images). But, when I looked at the volumes of the individual runs using tkregister2 command, the registration doesn't look good (bottom row images).
tkregister2 --s $subj --mov /$subj/bold/011/template.nii.gz --surf --reg new.dat --regheader .
I'm wondering if I need to do manual edits, and I appreciate any advice on that.
Thanks Mona
[cid:91ee52eb-c146-4bee-8cc8-19bf01ef7547][cid:487a26fa-1c27-4ed5-bd48-26a587d477d7]
[cid:479ab0d3-00f7-406c-886c-4d83c945708e][cid:332d78df-9a82-4c35-a603-aa7a1734ba0f]
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
