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Dear Bruce,
thanks for your quick response! I managed to do most of what I wanted in freeview. My last question: Is there any possibility to increase the thickness of the label outlines? Here the new code: freeview -f ${case_dir}/surf/rh.inflated:curvature_method=binary:label=${case_dir}/extracted_label/rh.label1.label:label_color=yellow:label_outline=yes:label=${case_dir}/extracted_label/rh.label2.label:label_color=Cyan:label_outline=yes:overlay=${base_dir}/sig.nii.gz -viewport 3d
Thanks again, Martin
-----Ursprüngliche Nachricht----- Von: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] Im Auftrag von Bruce Fischl Gesendet: Sonntag, 8. Juli 2018 17:49 An: Freesurfer support list Betreff: Re: [Freesurfer] changing label outlines in tksurfer
Hi Martin
can you try freeview instead? We don't support tksurfer anymore, and changing label color/outline color is trivial using freeview.
cheers Bruce
On Sun, 8 Jul 2018, Loeffler, Martin wrote:
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Dear experts,
I’m visualizing a 1st level sig-map together with two specific label files using tksurfer (Freesurfer version 6.0). I’ve extracted those labels before using mri_annotation2label.
I would like to change the colours of the label outlines. This is probably a very simple thing to do, but I am somehow stuck and would appreciate any help.
Here my code:
tksurfer Case01 lh inflated \
-tcl my_script.tcl \
-label-outline \
-label ${label_dir}/lh.label1.label\
-label ${label_dir}/lh.label2.label\
-o ${contrast_dir}/contrast1l/sig.nii.gz
with the .tcl file containing the following:
labl_set_color 0 0 0 255
labl_set_color 1 0 255 255
make_lateral_view
rotate_brain_x -30
redraw
Thanks for your help!
Martin