External Email - Use Caution
That set of files is too large to be included in some packages. Not sure what info you are following about pulling the files from GitHub, but for now you could try, - R. $ cd $FREESURFER_HOME/python/packages/ERC_bayesian_segmentation$ sudo wget https://secure-web.cisco.com/16qOF4aueY_oOax52PDUZUC7cAwLISvtZ1gYw5IfK8pvptX... wait for download to finish …$ sudo rm -rf atlas_full atlas_simplified$ sudo tar zxpf ERC_bayesian_segmentation/atlas_subdirs_20250217.tgz$ sudo rm ERC_bayesian_segmentation/atlas_subdirs_20250217.tgz On Feb 17, 2025, at 11:27, Chourrout, Matthieu <m.chourrout@ucl.ac.uk> wrote: External Email - Use Caution Hi all, I was trying to run the dev version of FreeSurfer from MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1gGb7gF2nKiypt4FLjrahIBuWyn147VH1mU3IaLLqH8_i3u... the content from MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://github.com/freesurfer/freesurfer/tree/dev/mri_histo_util/ERC_bayesia... not present in ${FREESURFER_HOME}/python/packages/ As instructed, I've put atlas_full/ and atlas_simplified/ inside ${FREESURFER_HOME}/python/packages/ERC_bayesian_segmentation/ when trying to run mri_histo_atlas_segment_fireants but had to manually create the subdir. can't open file '/share/apps/freesurfer-dev/python/packages/ERC_bayesian_segmentation//scripts/segment_fireants.py': [Errno 2] No such file or directory Can the files from ERC_bayesian_segmentation/ in GitHub be manually pulled out into this directory? Which files are required? Best regards, Dr Matthieu Chourrout Research Fellow on Correlative X-ray Imaging for the Large-scale Imaging of Neural CircuitsUCL Mechanical EngineeringMaterials, Structure and Manufacturing at Harwell (MSMaH)Rm 4.17 Malet Place Eng. Building, Torrington Place, London, WC1E 7JEBloomsbury Campus, University College London_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer