Have you looked at the images to verify that there are no major problems with it? Can you run it outside of the HCP pipeline to make sure it is not an interaction?
On 4/8/19 12:52 PM, Jayasekera, Dinal wrote:
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Dear all,
I have been running version 4 of the HCP Pipelines which now used FreeSurfer 6.0. I get the following error when running recon-all using their FreeSurferPipelineBatch script:
/nu_evaluate: crashed while running minc_modify_header (termination status=134)/ /nu_correct: crashed while running nu_evaluate (termination status=65280)/ /ERROR: nu_correct/
I didn't get this error previously when running FreeSurfer 5.3.0 on the same set of data. Are the MNI tools distributed through FreeSurfer 6.0 sensitive to the operating system and its version? Does anyone have a record of it working on an Ubuntu 14.04 OS?
- FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0
- Platform: Ubuntu 14.04
- recon-all.log: see attached
Kind regards,
*Dinal Jayasekera https://dinaljay.weebly.com/*
PhD Candidate | InSITE Fellow https://www.insitefellows.org/ Ammar Hawasli Lab https://hawaslilab.weebly.com/ Department of Biomedical Engineering https://bme.wustl.edu/Pages/default.aspx | Washington University in St. Louis https://wustl.edu/
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