Hi everyone,
We're making a template to register some monkey brain surfaces to. I've written a script based on instructions from the Surface Registration and Templates page ( http://surfer.nmr.mgh.harvard.edu/fswiki/SurfaceRegAndTemplates ) on FreeSurfer wiki. I'm stuck at "Round 1" with the "mris_make_template" command. In the first step we used:
mris_make_template \ lh sphere \ bu_edited bs_edited vi_edited \ lh.monk_temp_all.tif
As there were no *h.sphere.reg files yes, we used the *h.phere surfaces. My question is, for the next "mris_make_template" should we use the same (*h.sphere) surface or use the newly created *h.sphere.reg surfaces to create the template?
mris_make_template \ lh sphere.reg \ bu_edited bs_edited vi_edited \ lh.monk_temp_all.tif
Has anyone else used this process to create their own templates/ registered surfaces? Does anyone have any suggestions? Thanks.
- Jan Kalkus