Hi,
I ran recon-all on a server where Ubuntu is running.
Recently I installed separately freesurfer on a macbook, it is working (e.g. tkmedit bert), I moved my processed subjects to freesurfer/subjects on the macbook but I can not work with them. I have the below error. I changed the permission to 777, it is still not working. Now what is really strange is that, using the finder I do not see the files in freesurfer/subjects but by doing ls -l in a terminal, I can see them…
Please note that SUBJECT_DIR is defined.
Any idea is welcome.
Thank you and best,
Damiens-MacBook-Pro-2:subjects dmarie2$ tkmedit hires_ct_pp1_N4_bet_MP2RAGEcorr/ brainmask.mgz -aux T1.mgz ERROR: cannot find subject hires_ct_pp1_N4_bet_MP2RAGEcorr/ in /Applications/freesurfer/subjects or it is not readable by you
Damien