glad it worked out
Bruce On Fri, 31 Jul 2009, Lena Palaniyappan wrote:
Dear group
Many thanks for all your help and encouragement. I avoided analyze format as suggested - Converted extensionless dicom files to nifti1 mode using MRICONVERT ( http://lcni.uoregon.edu/~jolinda/MRIConvert/) and then used mri_convert to obtain .mgz files. It worked :) !!
The MRICONVERT program does not mind the absence of .dcm extensions from Philips scanner.
Cheers Lena
On 30/07/2009 13:36, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
Hi Lena,
you definitely want to avoid analyze format, as it will remove the direction cosine information you need for example to tell left from right (it's probably why you have a flip).
We don't have much experience with dicom. Have you tried using -it dicom in mri_convert to be explicit about the format?
cheers, Bruce
On Thu, 30 Jul 2009, Lena Palaniyappan wrote: