If you have 5.1 you can also use long_mris_slopes (see tutorial) to generate difference maps (or actually I recommend symmetrized percent change) and run qdec on them.
You can also stack thickness files within each time point and then load it into matlab and run any other analysis.
Cheers, Martin
On Thu, 2011-05-26 at 10:57 -0400, Douglas N Greve wrote:
Mayuresh, If you only have two time points, then you can use the paired-t pipeline detailed on the wiki. doug
Mayuresh K wrote:
Hi freesurfer experts,
Is there a way to perform a repeated measures ANOVA with a between subjects factor (two groups)? I am interested in comparing cortical thickness differences between the matched scans between the two groups i.e. measures*group interaction.
How would I setup this design in freesurfer?
Thanks, Mayuresh
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