Hi Bruce/hi all,
Yes I am sure that I did not run out of disk space and I still get this error message for mris_calc. Do you have any suggestions?
Thanks in advance Nicole
Message: 1 Date: Mon, 9 Nov 2015 12:34:24 -0500 (EST) From: Bruce Fischl fischl@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all error message To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Message-ID: alpine.LRH.2.20.1511091234090.3068@gate.nmr.mgh.harvard.edu Content-Type: text/plain; charset=US-ASCII; format=flowed
Hi Nicole
that's a very strange error. Are you sure that you didn't run out of disk space?
Bruce
On Mon, 9 Nov 2015, Nicole Zurcher wrote:
Dear all,
One of my freesurfer recons is failing and I am not sure how to troubleshoot.
This is the error message that I get at the end of the recon-all log file:
mris_calc -o lh.area.mid lh.area add lh.area.pial WARNING: # of slices=-106 in header - assuming 124... read_signa([path]/surf/I.001): could not open file No such file or directory mris_calc: could not establish read access to 'lh.area'. No such file or directory
and this is the command that appears in the recon-all.error CMD mris_calc -o lh.area.mid lh.area add lh.area.pial
See attachment for entire recon-all log file. Any help is greatly appreciated.
Thanks a lot Nicole