Re: [Freesurfer] recon surf folder is missing data

Hi Jake

looks like recon-all stopped in the middle of running. You can see this because (1) the recon-all.log file is in the middle of the surface deformation, with no error message or termination notice, and (2) there is an IsRunning.lh+rh in the scripts dir, meaning FreeSurfer thinks the recon is currently running. You can finish it with:

recon-all -s $subject -sd $SUBJECTS_DIR -make all

cheers, Bruce

On Tue, 10 Mar 2009 jake@nmr.mgh.harvard.edu wrote:

Hi All,

I was just wondering if anyone has had data missing from the surf directory in the recon folder of a subject, ie- right hemisphere data is missing, or no data at all. Here is the path to a recon where I recently have found missing data:

/space/amaebi/35/users/ablood/R01_Botox/R01BTX_recons/CD_R01BTX_pat2_sess4_recon_missing_surfdata

Any help would be greatly appreciated,

thanks Jake _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer