Hi Torben - I just scrolled to the end of your log file. The last invocation of trac-all -prep is the one that failed b/c of the bvecs error. Did you rerun trac-all -prep after you fixed the bvecs?
Thanks, a.y
On Tue, 26 Jun 2012, Torben Prokscha wrote:
Hi Priti,
thank you for your reply, but I'm afraid you didn't scroll to the end of the log file: Yes, we had that bvecs/bvals error in the first run, but we corrected it and got the error I reported in my previous mail (it is also printed at the end of the log file):
ERROR: Could not open /Users/torben/Desktop/tracon/fs_diff/s001/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt
Could you or anybody else please help with this problem which is obviously related to missing tracts?
Thanks in advance Torben
Hi Torben,
Your trac-preproc exited with errors because of the following error.
Error: bvecs and bvals don't have the same number of entries
You should check to see if your bvals and bvecs have the same no.of lines and then rerun trac-all -prep.
Priti
Dear all,
while running trac-all, I got the following error:
ERROR: Could not open /Users/torben/Desktop/tracon/fs_diff/s001/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt
Obviously, a similar problem was discussed before (here: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-August/019570.ht...). However, no general solution was publicly mailed. Since it was requested then, I attach the trac-all.log file.
Thanks in advance for any help!
Best Torben Prokscha
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer