After I run recon-all -version, it shows: "v 1.133.2.57 2009/08/06'. Since we have a lot of scripts for the older version, we kept using the old one. If we don't use mkanalysis-sess.new, what we shall use?
Yang
On Tue, Aug 9, 2011 at 12:51 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:
Yes, but don't use mkanalysis-sess.new. Are you not using version 5.X? doug
Yang Liu wrote:
Hi Doug,
Thank you for prompt reply. So I should remove '-gammafit', and add '-fir 4 24' is for mkanalysis-sess.new?
Yang
On Tue, Aug 9, 2011 at 11:42 AM, Douglas N Greve < greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.**edugreve@nmr.mgh.harvard.edu>> wrote:
If you want a time course, you should use an FIR model, something like "-fir 4 24" to start the time window 4 sec before the stimulus onset and stop it 20 sec after stimulus onset. Do not include -gammafit.
doug
Yang Liu wrote:
Hi all, I want to plot the hemodynamic response of a voxel after my analysis finishes. I hope I can get the hemodynamic response of each voxel for each session, so I can see the statistics by myself. My analysis.cfg is below: -gammafit 0 8 -gammaexp 0.3 -timewindow 40.0000 -prestim 0 -polyfit 2 -TER 2.0000 -autowhiten 40 -nskip 0 -fwhm 0 -extreg mcextreg -nextreg 3 -rescale 1000 After I ran selxavg-sess, I got the following volumes: h0.nii, h0-offset.nii, h.nii, h-offset.nii, rstd.nii, rvar.nii. How can I get a response from these volumes? Yang ------------------------------**------------------------------**
______________________________**_________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.**harvard.edu<Freesurfer@nmr.mgh.harvard.edu>https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.**edugreve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358 tel:617-724-2358 Fax: 617-726-7422 tel:617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/**fswiki/BugReportinghttp://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.**harvard.edu/fswiki/**BugReportinghttp://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/**facility/filedrop/index.htmlhttp://www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.**edu/facility/filedrop/index.**htmlhttp://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/**compliancelinehttp://www.partners.org/complianceline. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/**fswiki/BugReportinghttp://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/**facility/filedrop/index.htmlhttp://www.nmr.mgh.harvard.edu/facility/filedrop/index.html