Should be, so long as it is the uncorrected value. Is that the CWPmax?
On Mon, Oct 3, 2016 at 2:57 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
In the table produced by glmfit-sim, the maximum vertex-wise uncorrected -log10(p) is given. Is that enough?
On 10/03/2016 02:55 PM, Corinna Bauer wrote:
Hi all, just following up on my previous question. For the purposes of showing uncorrected p-values <0.005 as well as the corrected results (via mri_glmfit-sim) I would like to get the table of uncorrected p-values. I have tried using mri_glmfit-sim --glmdir results.glmdir --cache 2.3 abs --cwp 1 --2spaces and it does output p-values, but there has gone through the simulations. I would like the raw p-values from this step: mri_glmfit --y rh.noreg.thickness.08B.mgh --fsgd file.fsgd dods --C diff_noreg.mtx --surf fsaverage rh --cortex --glmdir rh.thick.noreg.sm08.glmdir
What command would I use?
Thanks Corinna
On Wed, Sep 21, 2016 at 4:31 PM, Corinna Bauer <corinnab83@gmail.com mailto:corinnab83@gmail.com> wrote:
Hello all, I would like to get a table of the uncorrected p-values to compare with the corrected ones obtained using mri_glmfit-sim. I tried the following, which outputs a table of clusters and their vertices, but it does not include p-values. Is there a flag that I shoudl include to output the p-values? mri_surfcluster --in sig.mgh --sign abs --subject fsaverage --hemi lh --surf white --annot aparc --no-adjust --bonferroni 2 --no-fixmni --ocn cache.uncorr.abs.sig.ocn.mgh --oannot cache.uncorr.abs.sig.ocn.annot --cwsig cache.uncorr.abs.sig.cluster.mgh --thmin 2.3 --sum cache.uncorr.abs.sig.ocn.dat Thanks corinna
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