Thanks Bruce. Kind regards, Bronwyn Overs Research Assistant
Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265
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On 3 Jul 2017, at 11:55 pm, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Bronwyn
not yet, but we'll get to it soon
cheers Bruce On Mon, 3 Jul 2017, Bronwyn Overs wrote:
Hi Bruce, Just wanted to check in on the status of reviewing our medial surface problem. Any luck so far? Kind regards, Bronwyn Overs Research Assistant Neuroscience Research Australia Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 neura.edu.au http://neura.edu.au/ Follow @neuraustralia on twitter Follow NeuRA on facebook Subscribe to the NeuRA Magazine
On 14 Jun 2017, at 9:52 am, Bronwyn Overs <b.overs@neura.edu.au> wrote:Hi Bruce, That's fine, thanks very much. Bronwyn Overs Research Assistant <neura-logo-email.png> Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia M 0411 308 769 T +61 2 9399 1883 neura.edu.au Twitter | Facebook | Subscribe ____________________________________________________________________________ From: "Bruce Fischl" fischl@nmr.mgh.harvard.edu To: "Freesurfer support list" freesurfer@nmr.mgh.harvard.edu Sent: Wednesday, 14 June, 2017 00:02:04 Subject: Re: [Freesurfer] Medial Surface Problem thanks Bronwyn I got them. It will take a bit for us to get to as this is in the long stream and we have a new postdoc who will be taking it over. cheers Bruce On Tue, 13 Jun 2017, Bronwyn Overs wrote:
Hi Bruce, Sure, files have been dropped again.
Kind regards,
Bronwyn Overs Research Assistant
Neuroscience Research Australia
Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265
neura.edu.au
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On 13 Jun 2017, at 11:44 am, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:Hi Bronwyn Can you filedrop it again? I don't think I have it Thanks Bruce
On May 15, 2017, at 8:27 PM, Bronwyn Overs b.overs@neura.edu.au wrote:
Hi Bruce,Thank you for offering to take a look at this medial surface problem.
I have uploaded all of the relevant files to through the Martinos Centre FileDrop v2.0 to your email address (fischl@nmr.mgh.harvard.edu). Please let me know if you require any additional information.
Kind regards,
Bronwyn Overs Research Assistant
Neuroscience Research Australia
Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265
neura.edu.au
Follow @neuraustralia on twitter Follow NeuRA on facebook Subscribe to the NeuRA Magazine
On 5 May 2017, at 8:25 am, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:if someone can upload a dataset as well as the exact coordinates of the problem I'll take a look
cheers Bruce
On Fri, 5 May 2017, Yann Quidé wrote:
Hi all, We also have the same issue, any idea/suggestion? Thanks. Yann On 27 Apr 2017, at 9:43 am, Bronwyn Overs <b.overs@neura.edu.au> wrote: Hi Mailing List, Still trying to solve the below medial surface problem. Does anyone have any ideas? Kind regards, Bronwyn Overs Research Assistant Neuroscience Research Australia Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 neura.edu.au Follow @neuraustralia on twitter Follow NeuRA on facebook Subscribe to the NeuRA Magazine On 28 Mar 2017, at 10:51 pm, Yann Quidé <yannquide@gmail.com> wrote: Dear all, I have an equivalent issue with my data. Any idea on how to fix this? Thanks. Yann Begin forwarded message: From: Bronwyn Overs <b.overs@neura.edu.au> Subject: Re: [Freesurfer] Medial Surface Problem Date: 20 March 2017 10:28:37 am AEDT To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Hello again mailing list, Can anyone address the possible cause of the medial surface problem shown below (overestimating of rh medial surface, shows up in the long image and not the tp or base images). Forgot to mention that I am using freesurfer v5.3 with an updated mris_make_surfaces binary (sourced from thedevelopmentversionat ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurfer/dev_binarie
s/cento s6_x86_64/ ). Here is the image again: <unknown.png> Kind regards, Bronwyn Overs Research Assistant Neuroscience Research Australia Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 neura.edu.au Follow @neuraustralia on twitter Follow NeuRA on facebook Subscribe to the NeuRA Magazine On 6 Mar 2017, at 1:17 pm, Bronwyn Overs <b.overs@neura.edu.au> wrote: Hi mailing list, I am currently processing a longitudinal image and have come across a problem at the medial surface in the long image (step 3). As you can see in the attached image, the rh medial surface has been significantly overestimated and extends into the lh surface. This error showed up only in only 1 of the 2 long images for this subject, and both the time-point images and the base are perfectly fine. Do you know why this is happening? <Screen Shot 2017-03-06 at 1.09.53 pm.png> Kind regards, Bronwyn Overs Research Assistant Neuroscience Research Australia Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 neura.edu.au Follow @neuraustralia on twitter Follow NeuRA on facebook Subscribe to the NeuRA Magazine _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.